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## Description
It would be great if the census had some coarse cell types / compartment information in addition to the fine grained cell types!
## Context
For UCE, I wanted to view transferre…
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Hi guys,
I performed the statistical analysis on a merged dataset.
This merged dataset was preprocessed as follows:
I had one dataset containing stromal cells and one dataset containing T cells (…
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First, Thank you for this fantastic package! However, I am having an issue where some aspects switch the ligand cluster source while others do not.
In my data the only sources of Spp1 for Mdr2KO ar…
WayGW updated
3 weeks ago
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Hello, I'm currently using BayesPrism for deconvolution and I have a question.
I'm working with single-cell sequencing data, which includes an equal amount of tumor cells and normal (non-tumor) cel…
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After running the first commands for Figure 1 (01_human_clustering.R), which completed without errors, the second script (02_human_cluster_mapping.R) generates errors. Please advise
>Rscript 02_hum…
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Dear All,
I'm running the code for inferCNV and everything gets generated correctly but in all the heatmaps generated the reference cell heatmap is missing.
The code I'm using for the run i…
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Hello!
We performed single-cell RNA-seq on ~100k cells and annotated them with the Cell Ontology as part of the Tabula Muris project (paper: https://www.biorxiv.org/content/early/2018/03/29/237446).…
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Hello,
Thank you for this great tool.
I'm working to analyze multiple samples from different conditions and compare to published data, in total there are 240k cells over ~40 samples. Four broad …
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Hello, would it be possible to make the batch corrected count matrix used to generate the main UMAPs publicly available? This would be very helpful for analyzing the effect different batch correction …
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## Motivation
Census users with modeling needs have expressed interest to identify true numerical duplicates for cells, as compared to `is_primary_data` which is curation-based and in some cases a …