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Hey,
where can I download the data to redo the predictions? E.g.:
data/TCGA_GDSC/gdsc_exprs.csv
data/gdsc1_sensitivity_update.csv
data/path_embed_processed.csv
Thanks
Pascal
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Hi,
I installed prov-gigapath on Linux and I can run the examples you've shared.
Now I would like to use it to automatically classify tile/slide content, like: does this tile contain cancerous cel? …
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excuse me ,I am facing an issue when running CIBERSORT package:
when I try this:
```
library(CIBERSORT)
sig_matrix
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If I want to analyze the RNAseq data of TCGA, which data should be used? count or tpm or fpkm?
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> cor_results % XenaBrowse()
Try querying data #1
Try querying data #2
Try querying data #3
Try querying data #4
Try querying data #5
value[[3L]](cond)里有警告:
Tried 5 times but failed, please c…
234pk updated
2 months ago
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- [ ] #120
- [x] test set level table
- [x] gene level cancer type heatmap
- [x] patient specific bar graph stratified by cancer type
![image](https://github.com/jyaacoub/MutDTA/assets/50300488/…
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I was wondering if there are plans to expand the clinical data in the PanCan TCGA studies with data that is present in the Provisional TCGA data. For example, the Provisional TCGA BRCA has 140 clinica…
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Hi,
I'm having trouble running CARMA on TCGA segmented data. The segment files have these columns: Sample Chromosome Start End Num_Probes Segment_Mean
If I run the segment files I have this err…
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Hi Jakob and co-authors,
Thank you for your contribution for creating a model to segment MR structures! My lab is very excited to try it out.
I was curious about the data that you used from Ima…
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Hi @GeorgeBatch, while running the command bash `./0-download-LUSC-and-LUAD.sh`, I encountered an issue where the WSI used for testing in DSMIL are not being downloaded. According to the documentation…