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I looked at a variant - https://variantgrid.com/variantopedia/view_variant/242383859 in 210628 VCF in an [analysis](https://variantgrid.com/analysis/5699/)
If you look at the variant, it doesn't list…
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In the summary of the meta-analysis (below) there is a total tally of variants per category. However, this seems to be a bit of (error file reports many more variants that were not found in the refere…
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Hello rMATS community,
I'm new to alternative splicing (AS) analysis and seeking guidance on a few topics. Any help would be greatly appreciated!
1) When running a paired analysis with the --paire…
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When access haplotypes data, there are cases where there are no data for a given sample set and analysis, e.g., for the "arab" analysis where a sample set has no arabiensis samples. Currently the appr…
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**Is your feature request related to a problem? Please describe.**
This is the list of Categories on Dockstore, though manual curation is slow:
```
COVID-19
Genomics Toolsets
Alignment
Assembly
Asso…
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Hi there,
I'm using SAIGE v1.0.4 with conditional analysis. This works well when I have a set of variants, but when there is only one variant in the condition (e.g. --condition=1:1:C:T) I get this …
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- [x] factorise [p corpus-analysis] subpatch into abstraction
- [ ] replace in all main patches
- [x] clean up printing/reporting
- [x] check arguments: corpus audiotrack descrtrack (see #112)
- […
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## Goal:
- What proportion of variants and which ones show a signal relative to their WT?
## Basic Analysis using mean profiles:
- Using correlation coefficients (by Marzieh)
- [x] Replica…
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> Single variant meta-analysis fails with an error unless a set test option is listed in the command, but runs fine as long as one set test flag is included. However, the command as a whole still erro…
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Hi guys,
I get regular requests from collaborators to look if we have seen germline variants in a specific gene within our AFHCS or GA cohorts. I've created a 'Gene Search' analysis to have a quick…