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Build 37 links now take you to a build 38 variant, need to change the link here -
https://github.com/AWGL/somatic_db/blob/87c5238e72da38d9a4790c97e235ad91c5caa1df/analysis/templates/analysis/analy…
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Configuration file: github.toml
Description: VariantTools, software tool for the manipulation, annotation, selection, simulation, and analysis of variants in the context of next-gen sequencing analys…
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Hi CoVariants team!
As part of the Cambridge Festival @bethsampher & @JamesABaker (both at the Wellcome Genome Campus) ran a hackathon to spark ideas around making use of the large amount of sequen…
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I’m using bcftools (v. 1.20) for variant calling with mpileup and bcftools call, but I’m encountering the following error message:
"Failed to read from standard input: unknown file type".
I’m usin…
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Hi, we have some R9 data that turn out to be a bit challenging. So we'd appreciate any suggestions.
We know that technically speaking, DV natively support only R10 data. And for R9, the recommended p…
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Dear Zhan, I am runing a single variant analysis so my command:
../executable/rvtest --pheno pheno --inVcf example.vcf --single wald --out out1
And this command does not output does not report …
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👋 Folks,
Scenario:
We have several internal organizations (e.g., org1, org2, org3), and we want to run variant analysis across all different repositories within these organizations. However, we on…
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We should add a number of command line arguments to `wpt run` to make it possible to select the subset of tests in Interop.
There's a few potential variants here:
* Running tests with a given l…
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Hello, I would like to ask a question about the chrX analysis plan.
I am sorry that this question may be too basic, but I would like to know how we should interpret and apply the results of heteroz…
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## Summary of request
It is desired to have dynamic schemas define the file types that can be submitted for each type of analysis. As a practical example, the file types submitted to sequencing exper…