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Hi!
I have a question which might not be related to NanoFilt. I have some Nanopore Minion long reads basecalled with Flappie. I tried Nanoplot on them to check the statistics and everything looked ok…
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we have Nanopore metagenome data from MinION platforms which was mapped to Nucleotide sequence database(nt.gz) using minimap2 tool on 15GB RAM and after few minutes the process stops with error messag…
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Dear SMARTdenovo,
Hope this email finds you well.
While I was testing the program for a PacBio data (genome size 2.5Gb) in PBSpro environment, I have bumped into the same issue constantly at the "…
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Dear @davidebolo1993
i get this error when i run NanoR
NanoStatsM(NanoMList=List,NanoMTable=Table,DataOut="/data/lfainoData/trainingDataset/DataOut/", KeepGGObj = FALSE)
Analyzing...
Plottin…
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Hi,
I am using Canu v1.8 to assemble contigs from Nanopore Minion amplicon data on a Mac. My target gene is ~650bp. This is the command I am using:
`canu -p $myprefix -d $myinputdir genomeSize=1…
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Hi,
I tried to run Shasta with:
```
#!/bin/bash
set -e
SCRIPT='/home/raymond/devel/shasta/shasta-Linux-0.1.0'
inputFile='canu_corr150x.correctedReads.nonOtherChar.fasta'
outputFile='correct…
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Hello Everyone,
We are running Canu (version 1.8) using a hybrid of PacBio Sequel+RSII and Nanopore reads using a cluster with slurm as workflow manager.
The CANU command that I use is
```
…
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Dear all
I am using canu-1.8, I guess the most updated version of canu. After a few hours of running, I got the error message bellow.
I used this command line:
```
/home/vinatzerlab/Software/canu-…
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2019-04-11 15:40:56,629 NanoPlot 1.18.2 started with arguments Namespace(N50=False, alength=False, bam=None, barcoded=False, color='#4CB391', cram=None, downsample=None, dpi=100, drop_outliers=False, …
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Could you specify the nanopore version used for the input ecoli reads mentioned here? Is there latest MinION simulated reads with you, if so could you please share?