-
If I try to parse the VCF header from [this file](https://github.com/roryk/tiny-test-data/blob/master/vcf/spec-svs-v4.1.vcf), which I think has a valid VCF header, I get an error.
Code:
```rust
…
-
Would be useful in near future for GEL at least as we will start to get decent CNV calls soon.
In principle it could be pretty simple i.e. any gene deleted by a CNV gets a variant score of 1 and wh…
-
We should be able to attach VS to a running IPython kernel, submit code, and debug cells as they execute.
(Note that this will require some work on Jupyter and IPython to support it. Without this wor…
zooba updated
3 years ago
-
Hi,
When looking at structural variants, I can view the individual breakpoints in IGV but when I click the IGV button to view the entire SV, I get the whole genome (it used to be an overview of the r…
-
Hello,
I am using the command to plot AF distribution for vcf files. But I am getting some error.
**The command:**
```
#!/bin/python
from fuc import common, pyvcf
common.load_dataset('pyvcf'…
ghost updated
3 years ago
-
Hello, I am currently performing structural variation detection with respect to the whole exome data of lung cancer tissues. Do you think my -x parameter should use the bed file of the non-exon region…
-
A split read going from the end of exon 4 to the beginning of exon 2 could indicate a duplication or alternatively a circular RNA if the input data is total RNA-seq, which sequences RNA molecules with…
-
Sometimes, one segment of a split read maps to a repeat such as a LINE or SINE. Is such a fusion plausible? SINE repeats are present in thousands of places in the reference genome and the best mapping…
-
Hi
For a tumor/normal pair, I filter the VCF output from GRIDSS with GRIPSS to get the somatic variants and it works well. However, I am wondering if the "germline" variants in the normal sample is…
xtYao updated
3 years ago
-
_From @Roxy-3DPrintBoard on March 30, 2016 19:59_
The Atmel ATSAM3x8e on the Due board is definitely viable. It has the benefit it can plug into the RAMPS or RADDS base board and at that point it i…