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Hello, it's me again !
so, EDTA finished its run on my chicken chr1. However, I ran into a bit of an issue...No non LTR elements were detected by the analysis, even when I used the --sensitive 1 sett…
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Hi. I'm having this error when using the option --long_reads file.fastq:
###FILTERING OUT LONG READS STARTED AT: 14:14:58 19-07 ###
Traceback (most recent call last):
File "/opt/LoReAn/code/lore…
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**Submitting author:** @HajkD (Hajk-Georg Drost)
**Repository:** https://github.com/HajkD/LTRpred
**Version:** v1.1.0
**Editor:** @lpantano
**Reviewers:** @dcassol, @mdozmorov
**Archive:** 10.528…
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should they be annotated to tranposition GO:0032196?
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Hello,
in the file.fa.EDTA.TElib.fa, virtually all transposons are labelled as "unknown":
16712 are unknown
48 are Gypsy
Presuming my study organism is not having completely strange transposons, …
ghost updated
5 years ago
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/jackgisby/packFinder
Confirm the following by edi…
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Following up on #14263
We should merge 'GO:0071359 cellular response to dsRNA' into 'GO:0071360 cellular response to **exogenous** dsRNA', since this what the term was presumably created for (see …
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In the *.cls.tsv file, the header is listed in the following format. However, in the place of "Order", the true classification should be in the "Subclass" level. For the order level, it probably shoul…
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Hi,
Here are the count from the TE library `genome.FLYE.sixLongest.fa.EDTA.TElib.fa`
```
DNA/DTA 52
DNA/DTC 50
DNA/DTH 476
DNA/DTM 654
DNA/DTT 2722
DNA/Helitron 15
LTR/Gypsy 38
LTR/unknown …
ghost updated
4 years ago
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On the stringtie homepage [not github](https://ccb.jhu.edu/software/stringtie/index.shtml#install) , v1.3.1 supposedly fixed this issue:
**"fixed a duplication of some output transcripts in -e mod…