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We have not regenerated the Neurobagel vocab file after recent-ish updates to the data model including the imaging/phenotypic session split, and addition of pipeline-related attributes in neurobagel/b…
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You can currently download all product.json from datasets returned using bl dataset query. We could also add the ability to compute the mean/stddev of specified entries within the returned JSON data
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Three pipelines GenEpi+DTK
1. Layered modular (CoTransmission): Scenario and Scientific Question (What's the isolated contribution of stochastic genotype seed replicates to the variance in genetic fea…
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Can make it and/or "signs and symptoms" (GENEPIO_0001523)) about
"symptom" (SYMP_0000462) and perhaps "Clinical Findings Indicator" (NCIT_C181043)) for signs.
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Hello Zach Lyu,
I was wondering if you can give the permission of the datasets you shared via Google Drive?
Thank you so much.
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Refer to Karen Day's work on varcodes for how similar two varcodes should be with similar genotypes
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I am trying to run my own data on SUPERGNOVA,
however, I get the following error when testing:
Preparing files for analysis...
Calculating LD scores...
49351 SNPs included in our analysis...
C…
liym9 updated
8 months ago
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Jake & Paul - I've added a jupyter notebook showing how to use the multithreading package in python.
I recommend the outline of the functions to look something like:
1) Splitting function (paral…
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We are currently trying to validate our series 3 target. @danaklug has done some reading on target validation and we would love some feedback on the definition.
Our definition can be found [here](…