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If I try to compile the these lines
```cpp
iDynTree::MatrixDynSize a;
m_kinDyn->getFrameFreeFloatingJacobian(m_frameIndex,
iDynTree::toEigen(…
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Hi,
I am using prody in a project to parse MSA files (and some other stuff). When trying to package it, it gives the following warning:
/prody/sequence/msa.py:11:from Bio.SubsMat import MatrixInf…
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### Describe the environment
I am reading IAB version `0.1.4.dev0` and using skbio version `0.5.6`. The implementation of affine gap penalty (i.e. specifying `gap_open` and `gap_extend`) is conceptua…
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Currently in the worst case the simulation takes 15 sec for 1 sec (Real Time factor = 1/15 = 0.06). The identified bottleneck is the library `RobotDynamicsWithContacts`.
### Identified Reasons
- …
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### Setup
I am reporting a problem with Biopython version, Python version, and operating
system as follows:
```python
import sys; print(sys.version)
import platform; print(platform.python_imp…
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Unfortunately the scripts try to fidlle with the site-wide directories (escaping the building sandbox subdirectories).This was denied by the build system:
```
make[3]: Entering directory '/scratch…
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FYI:
MMseqs2 has been committed to the FreeBSD ports collection.
It might be helpful to users if you could post a message like
the following on your website:
Thanks!
MMseqs2 can be installe…
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While parsing a larger FASTA file, I hit an error for a [specific protein sequence](https://www.ncbi.nlm.nih.gov/protein/EQB27059.1?report=fasta) (see below).
I could reproduce this behaviour with …
VarIr updated
3 years ago
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Dear Sir/Madam,
I am working on applying the RevBayes v1.1.1 (I cloned it from github at the beginning of this month) to the bear multistate morphology data provided in RevBayes tutorial. I have ad…
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### Setup
I am reporting a problem with Biopython 1.8, Python version 3.7 , and operating
system as follows:
3.7.8 | packaged by conda-forge | (default, Jul 31 2020, 02:25:08)
[GCC 7.5.0]
CP…