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I run under the LIUNX system and appear when the error correction
canu -p dyy.fq -d ~/dyy/hifi/D01/clean.canu.fq/ genomeSize=0.6g useGrid=false -pacbio ~/dyy/hifi/D01/DYY.ccs.fq.fastq
Print () on…
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We have already tested a prototype here: https://github.com/jermp/sshash/blob/statistics/include/util.hpp.
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Just installed the latest v1.4 using conda (with no installation issue), and run verkko with --hic1/--hic2 option, but encountered error like below:
```Removing output files of failed job untip sin…
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Could you please explain in detail, how the option --n-hap affects the work of Hifiasm?
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Dear author, I am now assembling an autopolyploid . Its ploidy is about 10. I meet some trouble in scaffolding. I use utg.fa and HIC data to partition.but I faild,more than 20000 Contigs are allocated…
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The parameter "--s-base" has recently been introduced to Hifiasm. There is a brief explanation in https://github.com/chhylp123/hifiasm/releases/tag/0.18.4 . Could you please provide a more detailed ex…
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I got some assertion error with verkko from conda (default parameters running with HiFi + Oxford Nanopore):
```
176456 unitigs after resolving
Building unitig sequences
Reading sequences from ..…
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Conda and make version do not generate an assembly for the E. coli dataset.
>ll ecoli
total 224M
drwxr-xr-x 2 cjh info 4.0K Jul 25 19:00 asm_contigs_k49_a3_lr25x_b500_s3_sim0.85
-rw-r--r-- 1 cjh…
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gfa merging function occasionally fails, which seems to be related to sequences with length zero. Ensuring that such sequences are never created (e.g. substitute null sequence with a single nucleotide…
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Hi @jermp,
Right now, compilation fails on M1 and M2 Macs for several reasons. First, the current version of Xcode doesn't support `-march=native` on these machines. Clang does upstream, so this…