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Hello,
That might be a python/bash issue more than one related to Clairvoyante, but I am unable to launch
clairvoyante.py callVarBamParallel.
I installed via conda.
Here is my commands.sh sc…
ghost updated
5 years ago
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Dear @alekseyzimin,
We are assembling a heterozygous 800 Mb plant genome with 100x Illumina PE + 40x ONT data using MaSuRCA 3.3.0 on Ubuntu . We encountered the following error during the Gap conse…
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Thank you for developing such a great tool to facilitate genome assembly!
I am trying to use all available nodes on our university slurm clusters, but the cormhap step took more than seven days and…
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The README states that the source tarball can be downloaded from the FTP server
ftp://ftp.genome.umd.edu/pub/MaSuRCA/
but this server is not reachable.
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**Operating system**
Which operating system and version are you using?
`CentOS Linux release 7.5.1804`
**Package name**
Which package / tool is causing the problem? Which version are you using…
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Hi Luigi!
I ran the pipeline (options: --stranded --proteins --short_reads --adapter --mask_genome --max_intron_length 10000 ) and it created an error:
Traceback (most recent call last):
> Fi…
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Hello,
I am trying to assemble an insect genome with MaSuRCA v.3.2.5 using Illumina PE 2x250 (80X) and Nanopore (35X). The assembly succeeds, I don't see any error message except "No gap closing po…
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program is a required column in analysis.
when loading (accidentally, its a bacteria) [assembly 185471](https://www.ncbi.nlm.nih.gov/assembly/GCF_000704625.1/):
```
INFO (TRIPAL_EUTILS): Insert…
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Hello
I am running into some issues with running funannotate predict, i am using a conda installation, with manually installed genemark and Augustus (and I am a new to bioinformatics).
`funann…
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## Bug report
### Expected behavior and actual behavior
Hello,
I'm trying to list the files in a particular s3 directory, where what I see using Nextflow and the awscli are different. Here i…