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Hi sourmash team! Is there a way to identify which reads in a metagenome have/have not been classified after running 'sourmash gather' and 'sourmash tax'? For example, a list of read IDs might be gene…
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Hello!
First of all thank you for developing Ribo-TISH! I have found it really useful for the QC it provides and also for uORF prediction.
I have a question that I am not sure that it is relevan…
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## Expected Behavior
- indexdb command should process RNA sequences and report k-mers of size 15
- a search with a RNA sequence on this database should finish gracefully
## Current Behavior
…
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Hello
Is it possible to add DNG support? Each DNG has embedded preview, so I think, it will be not very resource "hungry" for RPI to show this preview without real-time rendering :)
Thanks for your …
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Hi,
I have been trying to use VIBRANT on linux. I installed it through Gitclone as I had trouble trying to install the usual way. I had the message saying vibrant was good to go but when I tried t…
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Hi Arkadiy, thanks very much for developing this great tool :)
I'm trying to implement FeGenie, however, near the end of the analysis this error is raised:
`Pre-processing of final outout fil…
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Hello,
I tried using sqanti-sim.py classif with the .gtf-file for the GCF_000002985.6 c. elegans assembly (https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_000002985.6/). Is this a problem of SQANT…
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Hi!
I am using Hmmer3 with bivalve genomes looking for 70-80 aa genes. BUSCO scores for the genomes are in the upper 90s (96-98% complete for BUSCO Metazoa) and most assemblies are chromosome-scale…
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```
$ bazel run tag_array_64x184_floorplan_deps `pwd`/build
$ build/make ISSUE_TAG=mytestcase floorplan_issue
```
Needs this fix https://github.com/The-OpenROAD-Project/OpenROAD-flow-scripts/pul…