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The test failures in #41 are probably linked to two issues in the `test_fetch_decompress()` test:
1. The use_wget_if_available argument in `fetch_file()` results in different output for the functio…
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Hi,
I am really sorry because I have seen many issues about problems with initialization of the guppy server, but I am not able to solve it.
As it is described in the README, I used this code:
…
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Hello again,
Thanks for your incredible help in using this software. While everything is working now, I think another significant increase in efficiency could come from generating one output file p…
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From the [tutorial](http://kevlar.readthedocs.io/en/stable/quick-start.html) with this command:
```
kevlar simplex \
--case proband.fq.gz --case-min 6 \
--control mother.fq.gz --control …
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When using the `kitchen-dokken` driver with Test Kitchen on Windows the `run_command` appears to have Windows line endings in it, e.g.
`cat /opt/kitchen/run_command`
```
sh -c '^M
TEST_KITCHEN="…
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1. Category of support requested:
- [x] Choosing an open source licensing (outbound)
- [ ] Open source license compliance (inbound)
- [ ] Building a community of contributors
- [ ] Open source go…
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after i knew the number of thread using :
$ grep -Pc '^processor\t' /proc/cpuinfo
1
i tried
STAR --runThreadN 1 --runMode genomeGenerate --genomeDir ./ --genomeFastaFiles ./Homo_sapiens.GRCh38.dn…
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I am using MALT (version 0.4.1, built 24 May 2018) to align my DNA reads to a reference database. I got this warning n some of my jobs.
```
Nov 16, 2018 11:53:59 AM java.util.prefs.FileSystemPrefe…
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Hi, With the latest version of gatk 4.6.0 and the latest funcotator v1.8 annotation, all Clinvar fields are returning blank, even though there are many variants that I know are in clinvar. Seems like …
gevro updated
2 months ago