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Assuming the A1 A2 A3 ... (A) as source samples, and B as sink samples.
SourceTracker results showed ~90% of B microbiota is mainly contaminated by A community.
Specifically, OTU_1 in A contri…
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Hello,
I'm experiencing an issue with the output of the rarefaction.single() command in the newest mothur release.
Only the first four columns of the table are filled correctly.
![mothur_rarefa…
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## For time/group subseting
* Allow a probability table to be passed similarly to a FADLAD argument containing probabilities for each point in time. Probabilities can include one element (second ele…
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Import_database.sh has successfully generated sequence_taxonomy.qza and sequence_sequence.qza. Therefore, I run Launch_MinION_mobile_lab.sh but it is showing following warning message and not able to…
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Hi,
I am new in using this tool and overall the bioinformatics field
So could you help me to understand the number of observation in the output of:
biom summarize-table -i table.biom
and how I can…
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Dear All,
I have similar problem which you explained in the other post (). I am using singularity profile.
My config file is:
profiles {
standard {
process.executor = 'local'
…
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Hi Liz,
I'm running a set of human data that has been processed per the latest IsoSeq3 scripts. The Cupcake input file is HQ isoforms generated after _isoseq3 polish_. Minimap2 was run vanilla:
…
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The only output from `dist.shared`, `summary.single`, and others that employ rarefaction should be the ones with `ave-std` or `ave`/`std` in their file name. It's confusing which files to use and the …
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Hi,
I read your article about MetaDEGalaxy and found it very interesting. I was looking at the non-overlap paired end 16S workflow, and I would like some more details about it. Specifically, for …
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Locally a build of this site takes ~90s.
Heroku has 60s limit on boot time, it retries once and jekyll sometimes runs faster the second time. Here is a profile of a standard build:
```
bundle e…