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Hi. We've run into a small issue that we are hoping can be fixed in the next release. The abundance profile produced with the `-abundances` flag reports pair counts in scientific notation when numbers…
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Hi there,
thanks for your efforts developing `phylotaR`!
Unfortunately, I'm encountering issues when trying to run `phylotaR` for larger taxonomic groups (e. g. `txid=33630`). It happens during …
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With the chosen genomes, generate the abundance profiles.
Smartest seems to create a bash script that generates it for us.
Here is info from my comment on [#13]
**HOW I UNDERSTAND THE ABUNDANCE C…
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Traceback (most recent call last):
File "/home/zlinbz/miniconda3/envs/bracken/bin/KrakenTools-master/kreport2mpa.py", line 188, in
main()
File "/home/zlinbz/miniconda3/envs/bracken/bin/Kra…
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Hi, I used IdTaxa to create a taxonomy table, but I am having trouble using it to create a phyloseq object. I get the error
Error in access(object, "tax_table", errorIfNULL) :
tax_table slot i…
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Hello
This is a user of Kraken2.
PlusPF database was downloaded in 'https://benlangmead.github.io/aws-indexes/k2' , and the taxonomy information were installed using `kraken2-build --download-taxon…
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Hi,
**Is your feature request related to a problem? Please describe.**
As the last release of the human genome, with its ~145k CDS produces a 630Go results, and as the help of v1.4.0 says that on…
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Hi,
I'm super new to programming so I believe I'm missing something VERY obvious, so I apologize in advance for this question. In case these are relevant, I'm using a Mac and the PyCharm IDE. I dow…
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Hi,
I exported the reference databases I created in obitools3 using:
```
obi export Coll/Coll01_db_97 --tab-output --print-na -o Coll01_db_97_EMBL
obi export Coll/Coll01_db_97 --fasta-output…
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Hi
Thanks for a great tool. Great to be able to process the output files of kraken without knowing all of the TAXIDs and how they are linked together.
Have you considered making extract_kraken_…