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Hello,
There seems to be an issue with pandas when I try to run DRAM.py annotate on output files that were generated with VirSorter2 (development version with the --prep-for-dramv option). The erro…
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Hello, sorry to open this as an issue but it is more of a query. Is it possible to use ViralRecall to get viruses of the specific algal genome (chlorella) from the metagenomics dataset? Thank you for …
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Hi,
I have contigs assembled by plasmidSPAeds based on bacterial isolates PE reads -- therefore suspected plasmids. I want to further filter these contigs using plasmidVerify (as suggested in your …
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Dear,
We want to assemble viral contigs out of metagenomic data. We used Metaspades but still saw quite some fragmentation, especially for the viral contigs that have a high coverage. This is proba…
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Hi Simon,
I have installed VirSorter but I am getting this error when running:
`/srv/scratch/z3336178/anaconda/envs/virsorter/bin/blastp: error while loading shared libraries: libssl.so.1.0.0: c…
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| Name | Description | Size | Format | URL |
| --- | --- | --- | --- | --- |
| World Bank - Light Every Night | Light Every Night - World Bank Nightime Light Data – provides open access to all night…
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Dear developers,
I'm comparing the plasmid prediction of Metaplasmidspades for known plasmid datasets and would like to calculate True negative(TN) and false negatives for the dataset.
Can we reac…
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Hi,
Does gRodon underestimate the weighted community-level growth rate when it is larger than 5 hours?
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Dear Jiarong,
Thanks for the great tool. I followed the [SOP](https://www.protocols.io/view/viral-sequence-identification-sop-with-virsorter2-btv8nn9w?step=3) to identify the viral contigs in my as…
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Thanks for VirusBreakend, its a really nice tool!
tldr: **Is it possible to make virusbreakend work on BAMs aligned to reference genomes containing decoy sequences such that the output is identical…