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Here's a random grab bag of analysis we wish we could do but will bump out to future work
- (Supervised) MOA prediction using spherized Cell Painting profiles (we use Level 4)
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- Writing progress report
- Megan and Tarun will send out for comments on final version
- No figures necessary
- Beth will add language around wild-type clonal vs. resistance signatures (4 su…
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* This chapter should come before training!
* The order of profiling options should be:
* The Cell Painting CNN first
* ImageNet pre-trained second
* Your own trained model third
Also, is…
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@hillsbury and I chatted about adding a single cell normalization option in two different scenarios:
1. When using a single file (output_one_single_file_only set to true)
2. When using single cell…
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This issue involves splitting the canvas into a grid.
determine an appropriate size for the canvas and the number of cells.
Implement canvas painting methods that can take in a click position and dete…
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I am using the notebook given #54
When I run the loading part:
```python
ldm_stable.load_model('/content/drive/MyDrive/diffusion/logs/.bin')
```
Returns this:
```
----------------------------…
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Documenting notes here that I previously transcribed
* Cloning procedure was clarified in #45
* Next steps computationally
* Look at features that differentiate resistant and wild-type
* …
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I was wondering, in the cpg0016-jump dataset, where can I locate the image data associated with each of the five
channels and six fluorescent dyes described in the [Chandrasekaran et al. 2023 preprin…
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Previously, the UI for SCatterPlot looked like this, with the lasso tool as the 4th from the left.
![image](https://cloud.githubusercontent.com/assets/1186440/13264320/92e1eeea-da3b-11e5-9df4-5c1f5118…
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Include general instructions, a pointer to the configuration file and a pointer to the dataset.