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I realize you probably don't maintain this code base much anymore... however, if you do...
I am a graduate student in Graham Hatfull’s lab at the University of Pittsburgh. Because PhamDB makes use…
chg60 updated
3 years ago
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Use blastx to predict protein function from amino acid sequence by comparing to other known proteins using homology and preserved domains, im pretty sure you can also install it as a module in python …
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Maybe the MAFFT output doesn't give the proper format for your tool to run, but I am not getting correct looking results. Can you look at what MAFFT outputs here:
http://mafft.cbrc.jp/alignment/server…
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Hello,
Here is my code:
> protein_sequences ggmsa(protein_sequences, 300, 350, color = "Clustal", font = "DroidSansMono", char_width = 0.5, seq_name = TRUE, use_dot = TRUE)
And I get this …
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Hi Winnowmap Team,
I am trying to use winnowmap to do whole-genome alignments. In some cases, winnowmap is resulting in large unaligned regions like below:
![image](https://user-images.githubuserc…
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I am really new to MSA, would you mind telling me how to get the a2m file that this package required?
Thank you very much.
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Hi
I was wondering if you could help me out to set the main script for using all the cpu cores avaible. I count with 8 threads and it takes days for opening a single clustal file, I've tried linux an…
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Decide on different alignment strategies that we would like to be able to employ.
- [x] Filtered Sequence Alignment
- [x] Amino Acid Alignment with multiple GUIDANCE2 iterations.
- [x] Nu…
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Hi,
I just tried the function search_primer_pair. It is supposed to search for the forward primer by 5’-3’ on plus strand and for the reverse primer by 5’-3’ on minus strand. However, I got results…