-
Create better documentation about this likelihood
Generate posterior predictive interval
-
I am a bit confused about the "preparation of expression matrices" section in the STAR methods of the optimal transport paper. You define three different expression matrices: the UMI matrix, the log-n…
-
We will want to add some support for proportionality
- [ ] Implementation of proportionality metrics
- [ ] B-association regression tests
-
Hi,
It appears that `torch.probability` simply uses [softmax](https://github.com/pytorch/pytorch/blob/8472c24e3b5b60150096486616d98b7bea01500b/torch/distributions/constraint_registry.py#L246C41-L2…
-
Hi Thom,
I remember listening to your bioformatics chat podcast (https://bioinformatics.chat/propr) a while back and recently dove into the literature on several compositional data analysis reviews/…
-
Recently, there is an increase in temporal microbiota studies. Addressing relevant analysis such as community turnover, taxa- gain and loss (user defined thresholds for detection), stability of taxa i…
-
Hi!
Thanks for developing the tool and the RUST extension. I have a viral metagenomic dataset with 100 samples. I assembled viral contigs from each sample, and clustered the contigs into vOTUs usi…
-
@sbillinge
As how we deliver search functionality might be a very long thread, I create an issue here.
After taking suggestions from @sbillinge I have an idea on how to integrate search functional…
-
I came across the Czech equivalent of English _nothing but ..._ as in _He inherited nothing but debts_. The single example in Czech PDT has _než_ as `deprel=mark` & `upos=SCONJ`, while the following `…
nesor updated
4 months ago
-
Hi Zachary,
I’m new to network analysis and would like to use Spiec-Easi to generate a “inter-domain” network.
I have two data sets (both compositional) – one with microbial ASVs (350 ASVs, “MIC_S…