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Feature request:
Check completeness of genome (add nf-core module) busco
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(genome-assembly) [mchege@crcfe01 fastq]$ ~/.conda/envs/genome-assembly/bin/megahit -1 ERR2231568_1.fastqsanger.gz -2 ERR2231568_2.fastqsanger.gz -t 8 --k-min 21 --k-max 91 --k-step 12 -o megahit_resu…
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https://github.com/nf-core/sarek/pull/1358
```console
.command.sh: line 8: 36 Segmentation fault (core dumped) dragen-os -r narfmap --RGSM test_test --RGID "@RG\tID:null.test.test_L1\tPU:t…
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Hello,
I am using the chewbbaca_AlleleCallEvaluator on galaxy europe and locally on the machine.
When I use this tool on the allele call output, the "Core-genome Neighbor-Joining Tree" plot is missi…
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Could you please tell your interpretation of this log file for a algae assembly attept and how to improve assembly contiguity for this highly heterogygous algal genome?
It is canu 2.2.
```canu -as…
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Hello.
My name is Cristopher Yerena. I used Orthofinder with my samples. I had a directory with many outputs files. My goal is to analyze Pangenome. I checked many articles from many groups that us…
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Hi:
I wanted to use kalign to align CDS from eukaryote whole genomes ... 12 fasta files with an average of 20,000 sequences of variable length, average 1,200 bp, max 60,000 bp aprox. But I got the …
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Hi! Thanks for your work.
Is TrEMOLO suitable for application to the human genome?
I'm tring to detect insertions in human by TrEMOLO, but the program always stays at processing the genome.fast…
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We need to review what https://nf-co.re/sarek can do to determine:
- if it could be used as is
- if it could be used with modifications
- if we'd rather extract and replicate some functionality h…
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I need to run both `fcs-gx` and `fcs-adaptor` on a lot of genomes. To speed-up things, I was thinking if I could run them both in parallel (on the original genome fasta):
```bash
genome.fas.gz -> …