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### Description of feature
The current stop-codon detection in ampliseq could be improved and supplemented with frame-shift detection by implementing [MACSE](https://doi.org/10.1093/molbev/msy159). T…
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Hi @cpouchon,
it's me again. I might have found a bug in your code. When I want to capture nuclear DNA sequences using `./orthoskim -m capture -t nucrdna -c config_orthoskim.txt`, ORTHOSKIM ends wi…
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I'd like to ask if it would be possible to support the alignment of DNA sequences using the C API? I would like to integrate `block-aligner` into an existing C/C++ tool but cannot use the exisiting C …
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Have it output common sequences people use for things like DNA barcodes. Brian's code does this already, so incorporate it into SeqScout.
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It was originally implemented this way, but also erroneously caused the DNA sequence of the extension to display backwards. See #959.
I made the call to quick-fix the DNA sequence issue, since it c…
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_From @fedarko on April 18, 2017 9:59_
(as opposed to "DNA pointers"/node IDs)
We could process huge files using a chunk-by-chunk approach similar to how we process AGP files. We can also notify the…
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Hello, hope you are well!
I am very excited to try out the low-memory and fast searches created by RocksDB :) (Also, I will definitely be making use of `pairwise`!)
On my way there, I encountere…
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### Description of the bug
Error in the genome index step using both 2.3.0 or dev versions using the command below.
All reference files are from mirbase and fasta from Ensembl.
The test run worke…
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Hello! I've tried to pull two different metagraph Docker images for Metagraph using the following:
`docker pull ghcr.io/ratschlab/metagraph:latest`
`docker pull ghcr.io/ratschlab/metagraph:master`
…
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*Highlights*
With 50% of the samples analysed we can share the following highlights:
17.5L of water - roughly two buckets, contained:
-over 20 million DNA sequences of which 12,500 unique seque…