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Not sure everything that should be in here - but a place hold for this feature request.
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The inspect command reports the container used during a pipeline execution, for example:
```
» nextflow inspect . -profile wave
{
"processes": [
{
"name": "RNASEQ:INDE…
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### Description of the bug
Not really a bug but I discovered that two rows cannot share the same sample ID. It might be good to make a note of that in the usage.md doc.
### Command used and terminal…
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- Better explain results when they are flagged
- e.g. what does this mean, what is to be done
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Hi,
I downloaded fastqc, but I have a problem when running it.
There is a black window with only the QC icon appearing after that.
P/S: I'm using openjdk version 17.0.8 to run FastQC.
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Hello,
I am getting the following error running (nextflow run main.nf -profile test,conda). Can you please help me to fix this issue?
Thank you,
Irmarie
N E X T F L O W ~ version …
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@jennaj informed me that she actually uses these so we should continue improving them!
We made a first round of improvements but here is an issue to collect ideas for future work
https://training…
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Add [FastQC](http://www.bioinformatics.babraham.ac.uk/projects/fastqc/) to Piper as a additional quality control step.
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From @cmeesters
> Major Issue:
> here it does not pay out to start with a counting reads rule: there is no motivation to do so. It is not necessary and there is no scientific connection to the DAG…
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Hello,
I have running FASTQC 90 fastq files in non-interactive way. My instance running for a long time, and it seems like not stopping. When I monitor the process, it shows the CPU and network usa…