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`chr2 239599318 Minda_84 N . PASS SVLEN=307;SVTYPE=INS;SUPP_VEC=ONT_Sniffles2.INS.621M1,ONT_severus_INS15836,ONT_i_210,ONT_ID_37779_1,PB_severus_INS13963,PB_i_526
`
https://v2.genomeribbon.com/?sess…
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## Overview
Right now, we are using the predicate `RO:0003303` (_[causes condition](https://www.ebi.ac.uk/ols/ontologies/ro/properties?iri=http://purl.obolibrary.org/obo/RO_0003303)_) to represent al…
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Hi,
I want to run OrthoFinder from the Gene Trees step onwards. The reason is that I am only interested in the duplication history of a subset of orthogroups. However the default of OrthoFinder is …
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Hello,
I hope you're doing well. I wanted to express my appreciation for the remarkable repository you've created on GitHub in the field of aging biology.
I am currently involved in research related…
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I'd like to be able to visualize all the direct annotations to any member of a gene ortholog set. Currently, I can search for a gene, such as this search:
http://amigo.geneontology.org/amigo/search/bi…
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@cebos found that the output from Concatenator includes both the full genes and the genes subsetted by codon position. Not sure if this is the desired behaviour? PartitionFinder only wants the codon p…
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Is it possible to add an ability to create an orthology group with 1 gene from each species? (via selection longest or most similar to other genes in group if more than 1 gene is presented from specie…
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Is there a specific interpretation I should make if a gene is assigned to an orthogroup, but it does not appear it in a HOG? I've tried looking through the documentation, but I don't see much about HO…
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Hi @alexdobin . I want to count UMIs per gene per cell for Gene and Velocyto analysis, but based on `start+end+umi` per barcode, instead of `geneID+umi` per barcode which is what STAR seems to do. I t…
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Hi,
Thanks for developing leafcutter!
I have a question regarding the alternative splicing signals on tandem duplicated genes.
I found a region that contains five tandem duplicated genes that…