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**Are you using the latest release?**
If you are not using the latest release of funannotate, please upgrade, if bug persists then report here.
v1.8.13
**Describe the bug**
A clear and concise des…
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I'm creating some new annotations in Noctua that are just part of gene-by-gene curation, i.e. not part of a larger GO-CAM model.
I've named this model according to our import conventions, i.e. WB:W…
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Hi , I am reading and running the codes of your article. But I have a question, for example, from a generic model like Human_1_17.mat, how did you make tissue-specific models like blood, kidney, hear…
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Hi Brian,
Is this Lite version possible to perform UTR extending and update GFF annotation, using current predictions, plus nr assembled transcripts?
Thank you!
Best, Tao
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**Addition of Algorithm:**
My name is Matthew Marino. I am a CFDE GlyGEN summer intern working under Jeet Vora and Rene Ranzinger. I am currently trying to create multiomics workflows starting with…
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Hello!
I'm having a slight issue with the annotations generated by EGAPx. When I translate the CDS into a protein sequence, I'm seeing a lot of premature stop codons. This is a species where I am s…
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Right now I'm limiting the number of allowable no-Note genes to 100. Maybe 153 is fine, but there are also a lot of GO terms missing in this GFF (16,993 gene records DO have GO terms, though).
[con…
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Hello!
I am enjoyed on the abilities the sleuth provides on RNA-Seq data analysis. So I try to use it in my current project. I have a large dataset, where from I am interested in looking the DE for 1…
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Hi.
Is there a way to alter the filtering to gain more small genes? We are missing most of a whole class of genes in a plant. These genes are about 200 amino acids long. Will changing --min-coding-…
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This is not actually an issue but rather a request for help :)
I would like to include Prophet in my benchmark of foundation models for predicting the effect of genetic perturbation on gene express…