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Hi I would love to be able to run this with wgs sequences, and then again separately with amplicon assembles, so that ultimately I can make 2 trees and compare how they cluster depending on input sequ…
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I'm trying to run Funannotate Predict with a genome (fasta), trinity assembly of transcriptome (fasta), and alignment (bam) input files.
I encounter the following error:
CMD ERROR: CodingQuarry -p…
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As a **developer** I want **to monitor the number of hits in every L2G iteration** because **it is an important indicator tof the model's selectivity**
## Background
The number of genes that receive…
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This issue summarizes the steps to integrate action `chemical_gene_regulation_graph_expansion` into ARAX_infer:
- [x] Train two models (one for predicting `increase gene activity while the other fo…
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I used HGTector2 to predict HGTs in my genome, and it classified my genome as "phylum Proteobacteria". The prediction results showed that 318 genes were identified as HGTs, but only 40 of them had a '…
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Paper: https://www.nature.com/articles/s41592-023-01938-4
Abstract:
Joint profiling of chromatin accessibility and gene expression in individual cells provides an opportunity to decipher enhancer-d…
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## General
- Displaying numeric data:
- use numeric option in appropriate table columns (right-align, monospace font).
- format large integers with commas wherever appropriate
- round decimals w…
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This issue contains monthly updates to the ranked list of PubMed papers for curation. The full list can be found [here](https://github.com/tanayshah2/bioregistry/blob/5560dcf284f2c0309287e0a5a551e435e…
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**Describe the problem**
TF-target interaction is a missing opportunity as Multi-Instance Prediction.
**Describe the solution you'd like**
SCENIC+ / pySCENIC already has a well described resou…
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您好，冒然打扰，非常抱歉。
见您在CoSMIG的code下面有询问论文作者关于DGIdb数据集上inductive情况下的和论文结果有出入的事情，
1）您是直接使用作者github公开的code吗，还是说有找作者要的code呢
2）关于inductive的数据集，是作者发您了inductive和transductive两种情况下的数据划分吗
期待您的回复，万分感谢！！