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Currently, our genomic_pos and genomic_pos_hg19 fields are coming from Ensembl, therefore, only available for those species included in Ensembl release.
We should find out a good data source from …
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currently only numbers and "NA"s are allowed.
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Hi,
I am going to use SCATS to analyze 10x scRNA-seq data. After running cellranger, I can only get one bam file containing many cells. How can I generate metafile for SCATS step2? Can you give an ex…
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Dear Dev,
I am new user of TRUST4 on single cell TCR seq analysis, regardless, TCR seq could be successfully obtained using bulk RNAseq data.
I wonder, with my 3' 10x genomics GEX data (I have b…
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@09012000-tosca
-- **data owner**: EMBRC or the station or EMO BON?
According to [EMOBON’s Data Management Plan](https://www.embrc.eu/sites/default/files/publications/EMO_BON_Data_Management_Plan…
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When I used LRA to align the HG002 ONT data and ran the following code, I did not get any results. However, other alignment software worked fine.
```
/home/xxx/00.Software/SVDSS/SVDSS_linux_x86-64 i…
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Currently, for MSK IMPACT, we have mutations, CNAs and fusions/SVs, but we have many additional types of derived data generated by CMO.
- Mutational signatures
- HLA types
- HLA LOH
- Genomics-i…
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Hello I'm trying to create the standard Kraken 2 database, with the following command:
kraken2-build --standard --threads 16 --db kraken-Sdb
I'm getting this:
Step 1/2: Performing rsync file …
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Hi everyone,
I am analyzing my scRNA-seq data and I have 12 samples. I have run inferCNV on each one of my samples and have all the results.
Now I want to combine all the results and draw a heatma…
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Have this completed by March 1st
1. Please read the policy [here](https://giwiki.gi.ucsc.edu/images/1/1b/NIH_GDS_Policy.pdf)
2. Print it out then sign/date it
3. Scan it and upload it into your empl…