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One genotyping vendor types HLA using RT PCR / Taqman approach. It seems similar to SSP, and that can work in this case, but if there are future HML versions maybe we discuss if this is needed.
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Hello, I am trying to do joint genotyping with gvcfs produced by the [Octopus](https://github.com/luntergroup/octopus) variant caller. There isn't a preset (yet?) so I am trying to roll my own but gln…
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Hello!
I was curious if the current version does not support genotyping of DRB3/4/5 genes.
I've realized that though the mentioned genes are found inside the "hisatgenotype_db/HLA/fasta" directory,…
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Discusses PCR, primers, restriction enzymes, electrophoresis, analyzing gels, and DNA sequencing.
# @grabear's Checklist
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Hi,
it's a powerful tool I used. So could the tool genotype for the inversions?
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Hello,
I know this has been requested before, but are there any immediate plans to implement an option to genotype a list of variants supplied in an input VCF (similar to the forcedGT option in Str…
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I am following the Wiki to run: (see the screenshot attached)
All my bam and tsv files are generated correctly but when I am trying run the .sh file attached, I encountered a .slurm file and it…
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Many thanks for developing the tool.
Somehow I get an error that it's hardly reproducible. If I'm running GenoFLU in a single instance/sequentially it runs through without problems. However, if I'm …
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hello,teacher,my result that have a lot SNP loci which the FDR and P-value values are same,i think what one reason is that the genotyping results for some SNPs are consistent,while some SNPs with inc…
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Hello,
Thank you for this tool! Your paper on PRDM9 Allelic Variation is quite interesting. I also have some samples sequenced on PacBio. And I was wondering if you have a version of this script th…