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The GFE system downloads HLA.dat and KIR.dat from IMGT/HLA and IPD/KIR. For some applications (e.g. mapping PiNG reads) it is preferred to have imputed full gene sequence for all alleles. Steve Mack…
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Hi,
I am testing HLA*PRG for benchmarking and I noticed your hla_nom_g file is from 3.24.0 release however, your rearragned files containing allele sequences (mostly contained in tmp2/GS_nextGen/hl…
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Thank you for developing this excellent tool!
I am also from Wuhan, China. Congratulatations on your remarkable achievements!
I encountered the following issue while following the tutorial for 'Ru…
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Organize thoughts and outlines with Lesli about data needed for the clustering algorithm. Make sure that the outlines are clear so that we can move forward to Q5 seamlessly. Provide an outline of the …
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I'm getting a segmentation error when I ran HLA-LA at the --action HLA step. The stdout just says run was unsuccessful. If I run the part `./bin/HLA-LA --action HLA...` specifically, I get that it fa…
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Hi there,
When I run HATK on one dataset, the association output has only worked for SNPs with rsids.
The following error is displayed and no heatmaps are produced?
Do you know what could be causin…
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I'm working in a conda virtual environment, using R 4.0.5. dplyr gets updated to 1.0.9 when installing hlaseqlib, and gives a warning msg about "group_by" and a change as of dplyr 1.0.0 ... which may …
jfass updated
2 years ago
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Hi
I've encountered an issue when assembling the MHC region using individual HiFi data. I noticed that some sequences are assigned to both hap1 and hap2. For instance, hap1 assembled two different al…
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Hi,
We are trying to phase a region, but there remains a gap which cannot be phased using SNPs. Now we have tried the high-accuracy and high-success parameters of MethPhaser, but still we are unabl…
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I really liked that you put all related work in links in the related work folder. It is nice to see where to check for more information.
1. In homepage the input and output paragraph are merged toget…