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https://mp.weixin.qq.com/s/9SUcWmqfHNukADZuQiHVoA
ixxmu updated
1 month ago
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### Checks
- [X] I have searched **[the docs](https://greene-lab.gitbook.io/lab-website-template-docs)**, [existing issues](https://github.com/greenelab/lab-website-template/issues), and [existing di…
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## ❓ Questions and Help
We have a set of [listed tutorials available on the website](https://immunarch.com/articles/).
Hi,
I tried to install Immunarch by the following code on Rstudio which is ver…
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Hello,
I was comparing the outputs from MiXCR and Cellranger and I noticed that there are some differences between number of cell barcodes identified and the chains it gets assigned with. I was fi…
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## 🐛 Bug
repLoad fails to load data
## To Reproduce
Steps to reproduce the behavior:
1. run repLoad with path to csv files
TRB
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Hi,
What preset should be used with Fluidigm C1 platform?
Thanks and good day.
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**Question**
In the Chapter `AIR REPERTOIRE`, output is `path_tcr_out = f"{path_data}/TCR_01_preprocessed.h5ad"` in [30. Immune Receptor Profiling](https://www.sc-best-practices.org/air_repert…
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When I upload my files (IMGT/High-V quest zip.txz format), and when I run the SHM or immune repertoire pepline, it becomes green in the history but when I try to open the analysis by clicking on the e…
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Now that scirpy is part of scverse, we could think of an improved data structure for scAIRR data. See also the discussion at https://github.com/theislab/scanpy/issues/1387.
The challenge with scAI…
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In cell hashing or CITE-seq datasets, an additional count matrix is produced and it stores how many ADT/HTO barcodes (see this for details https://genomebiology.biomedcentral.com/track/pdf/10.1186/s13…