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Hi again!
I have two questions about converting KOs to KEGG pathways.
Regardless if I am analyzing KOs or KEGG pathways, I am using the "pred_metagenome_unstrat.tsv" as my input (please let me k…
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Hi,
I have annotated a set of MAGs using the standard database mode. I am looking through the annotation results and realized that all genes identified by either swissprot or tremble do not match t…
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Hi,
I am attempting to plot intron retention difference for a specific genes from an rMATs (4.1.0) run, and keep getting the following error when I run plotTranscripts:
> Dicer_KO_vs_WT CSNK2B …
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* eggnog2gbk version: 0.1.0
* Python version: 3.7.4
* Operating System: CentOS-7
### Description
Hello,
I did a annotation with eggnog-mapper on my new Pacbio assembly. The annotation and t…
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I guess this is caused by there being a `~` character in some gene name, as well as separating the genome from the gene name?
```
enrichm annotate --genome_directory dereplicated_representatives_f…
wwood updated
4 years ago
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I have generated KEGG KO annotation results (_woltka classify_) and pathway results (_woltka collapse_ on KO results), and finally pathway coverage results (_woltka coverage_ on KO results with KEGG `…
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Dear anvio teams (on others),
I am working with anvi-display-functions, using KOfam as annotation source.
I have a list of Kofams which i know to be linked with Carbon source to summarize which su…
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This issue is here to track SGF properties for which there is currently no clear way forward how to support them:
- All timing properties: BL, OB, OW, WL
- Obviously these can be supported as so…
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### Issue
After upload a little custom plugin inside new saved context, available plugins list seems empty :
![image](https://user-images.githubusercontent.com/16317988/104184667-172f7f80-5414-1…
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Moved from symfony-cli/symfony-cli#331
Symfony 5.4 LTS in theory support PHP7.4 but `symfony-cli new --webapp --version=lts` or just `composer require webapp --no-interaction` unable to finish if u…
zulus updated
5 months ago