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This issue can serve as a placeholder for use cases for sourmash/MinHash more generally.
Stuff we already have implemented:
* basic MinHash comparisons etc
* metagenome taxonomy breakdown
* st…
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I deployed a Rails App in a server at non-root using a virtual host with Passenger, and everything seems to be working perfectly (including all the references to the assets). However, when I introduce…
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Goodman, A. L.
Kallstrom, G.
Faith, J. J.
Reyes, A.
Moore, A.
Dantas, G.
Gordon, J. I.
2011.
Extensive personal human gut microbiota culture collections characterized and manipulated in gnotobiotic mi…
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Need to update. Current text from 2012:
There will be four key output from the EMP:
1. Gene Atlas (GA) is a centralized repository and database for all information acquired during this study. This re…
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Hi
I have been trying to build an index of a large collection of microbial genomes (102999) using HIBF and the resulting index is way larger than when I create the same index using IBF.
The rap…
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I have 200 metagenomes extracted from stream biofilms. I binned contigs to obtain MAGs and I dereplicated MAGs obtained in all samples to obtain a final pool of MAGs. Finally I mapped reads from each …
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Hi,
Im very new to bioinformatic and came across this tool recently. I work on metatranscriptomics and i have been following an assembly-free reference based pipeline to get my taxonomic and functi…
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Add walkthroughs/tutorials for basic use-cases to the documentation. The resulting images can also be added to the gallery.
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Hi there, I've been applying Plasflow to MAGs from waste water treatment samples, and it seems to be working really well! My question is more theoretical than technical - given that many of our assemb…
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The dimensions of biological data that we are able to investigate are formed by some choice of k, and we can represent biological scenarios in terms of `.kdb` files. By selecting some choice of k, we …