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seqan
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raptor
A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.
https://docs.seqan.de/raptor
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[LIB] Update to latest chopper main.
#435
smehringer
closed
3 days ago
2
[INFRA] Try codeql in container
#434
eseiler
closed
4 days ago
2
[INFRA] Update dependencies, fix linker error in util
#433
eseiler
closed
4 days ago
2
[UPDATE] Missing update on generate reads refseq
#432
smehringer
opened
4 days ago
7
[INFRA] Coverage
#431
eseiler
closed
1 month ago
2
[INFRA,FIX] codecov
#430
eseiler
closed
1 month ago
2
[INFRA] Update raptor to the latest main in the HIBF lib and chopper.
#429
smehringer
closed
1 month ago
1
[INFRA] Rework libs
#428
eseiler
closed
1 month ago
1
[FIX] static analysis
#427
eseiler
closed
1 month ago
1
raptor::raptor target and linkage
#426
eseiler
closed
1 month ago
0
[INFRA] Fix santizier/fortify
#425
eseiler
closed
1 month ago
1
[INFRA] Update sharg
#424
eseiler
closed
1 month ago
1
[FIX] Intel
#423
eseiler
closed
1 month ago
1
Bump fsfe/reuse-action from 3 to 4
#422
dependabot[bot]
closed
2 months ago
1
[INFRA] Update doxygen
#421
eseiler
closed
2 months ago
2
Issue with Generating Layout File in Chopper and Inputting into Raptor Build Index
#420
Mercury0533
opened
2 months ago
1
[MISC] Replace execution_handler with OpenMP
#419
eseiler
closed
2 months ago
2
[INFRA] Update lint
#418
eseiler
closed
3 months ago
2
[INFRA] CI
#417
eseiler
closed
2 months ago
1
[DOC] SPDX Licenses
#416
eseiler
closed
6 months ago
2
[INFRA] Update CPM
#415
eseiler
closed
6 months ago
2
Bump nf-core/setup-nextflow from 1 to 2
#414
dependabot[bot]
closed
6 months ago
2
Bump codecov/codecov-action from 3 to 4
#413
dependabot[bot]
closed
7 months ago
3
[INFRA] Use ccache everywhere
#412
eseiler
closed
8 months ago
2
[FIX] Layout window size
#411
eseiler
closed
8 months ago
2
[INFRA] Cleanup
#410
eseiler
closed
8 months ago
2
[INFRA] Bump CodeQL
#409
eseiler
closed
8 months ago
2
raptor installed with bioconda crashes
#408
fplazaonate
closed
8 months ago
10
Bump github/codeql-action from 2 to 3
#407
dependabot[bot]
closed
9 months ago
2
[INFRA] Use CPM
#406
eseiler
closed
8 months ago
2
Phibf
#405
smehringer
opened
10 months ago
2
[FIX] raptor::logspace::substract
#404
eseiler
closed
10 months ago
2
[MISC] Shuffle records in search
#403
eseiler
closed
10 months ago
2
[MISC] Remove unused code
#402
eseiler
closed
10 months ago
1
[MISC] major break: new hibf
#401
eseiler
closed
10 months ago
2
[MISC] Add complete search and cpu timer
#400
eseiler
closed
10 months ago
2
[MISC] Threshold minimum should be 1
#399
eseiler
closed
10 months ago
2
[UTIL] Simplified benchmark
#398
eseiler
closed
10 months ago
2
[UTIL] Update tests
#397
eseiler
closed
10 months ago
2
[UTIL] seqan branch is now main
#396
eseiler
closed
10 months ago
2
[INFRA] Update hibf and chopper
#395
eseiler
closed
10 months ago
2
[INFRA] Debug clang
#394
eseiler
closed
10 months ago
1
[MISC] Rename _KiB to _kibibytes
#393
eseiler
closed
10 months ago
1
[FEATURE] Improved timing output
#392
eseiler
closed
10 months ago
2
Option for writing timings to file
#391
eseiler
closed
10 months ago
0
Missing SDSL reuiqrement but submodule is present
#390
7PintsOfCherryGarcia
closed
11 months ago
4
[INFRA] Update hibf+chopper
#389
eseiler
closed
11 months ago
2
[INFRA] Add token to .codecov.yml
#388
eseiler
closed
11 months ago
2
[INFRA] Update hibf+chopper
#387
eseiler
closed
11 months ago
2
[UTIL] Add hibf_sizes
#386
eseiler
closed
11 months ago
2
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