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### Task Description
Currently the Taxonomy Importer uses a collection of local terms listed below. These were originally part of an organism_property cv but are now part of the local cv.
- line…
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### Current behavior:
As briefly mentioned in #607, some mitochondrial reactions in Human-GEM are associated with genes that catalyze analogous reactions in peroxisomes and not mitochondria. I foun…
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As part of the Variant Page effort, we have discussed to start developing the first two widgets (sample data has been shared on slack):
- [x] ClinVar
```
{
"alleleOrigins": [
"germli…
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Bio.Algorithms.Translation.Codons contains the standard genetic code. Should there be a second codon map for mitochondrial genes? AGA and AGG are terminating codons in mitochondria, and UGA codes for …
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New GO arrangement
iron-sulfur cluster assembly complex (GO:1990229)
|_cytosolic [4Fe-4S] assembly scaffold complex (GO:1904564)
|_cytosolic [4Fe-4S] assembly targeting complex (GO:0097361)
…
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1. Is REGENIE capable of analyzing mitochondrial genomes?
2. If yes, what are the parameters that I need to set to analyze mitochondrial genomes?
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16S would be ideal but all mitochondria would be ok
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I have an animal mitochondrial genome assembled by Unicycler (so no overlap). I'd like to orient and rotate the genome to agree with its closest relative in Genbank. I have a FASTA file of the related…
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Hi @hoelzer,
First, thank you for designing this nice tool.
I want to use poseidon in a set of mitochondrial genes, but, apparently, poseidon only uses the Standard Code.
Is there an option to de…
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- match current nuclear subtype or mito subtype pattern, results in TSV (DOSDP query)
- delete existing logical definitions
- generate from TSV the new logical definitions with the correct pattern …