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- [ ] updated sections on other packages (SpatialDecon, SpatialOmicsOverlay, etc)
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hello! I saw your ngs-data-for-pathogen-analysis webpage and have really studied a lot! But when I try to use REALPHY to calling SNP, I get back this error message. Can you help me ? Thanks a lot!
!…
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I'm pretty new to programming. I've taken an intro python class, one stats class that used R, and now I am learning linux to be able to handle NGS data.
I am curious about being able to do NGS dat…
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Hi!
I am trying to install HiC-Pro 3.1.0 following the instructions on its github page [github page](https://github.com/nservant/HiC-Pro). When I try to configure HiC-Pro by typing ` make configure` …
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Dear @Rosemeis,
Can you consider to package pcangsd in [Bioconda](bioconda.github.io/)?
Conda (through Bioconda) is the solution for the FAIRness of your tool.
I could have done it myself but I…
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Copy/pasting from source: https://github.com/openjournals/joss-reviews/issues/5313#issuecomment-1497107263
Thanks for pointing me to the script, I was able to download the required reference files!…
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13th-17th March, proposed schedule:
### Day 1
- Introduction to NGS analysis methods
- Introduction to R and Unix
- Practical: Unix
- Practical: R
### Day 2
- Graphics in R
- Alignment basics and RNAs…
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Another case of intra-host prolonged infection like Sabin22. SRA/GISAID sequences are both available. Discuss this with Bob first before entering.
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Hi,
I am interested in using GATB in long reads analysis as they seem more appealing with HiFi reads and ultra-long ONT reads. Is GATB specifically for NGS short reads? Will there be future support…