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hi~
proActiv::calculatePromoterReadCounts(files=files, promoterAnnotation = promoterAnnotion.genecode.dm6.subset,fileType="star")
we counted promoters count by using this function and found that ·…
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### Description of feature
Retrieve transcription start sites for genes for use with ATAC data.
This could be similar to the `GenomicFeatures::promoters` function (description available [in this v…
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Dear proBERT developers
Thank you for publishing this excellent model.
Also, great congratulations on the publication of the reviewed paper (https://www.frontiersin.org/articles/10.3389/fmicb.2023…
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iBioSim Version 2.8.1
Operating system: Windows 7
Bug reported by: avery.gardner@utah.edu
Description:
It would be nice to be able to move the connection lines, especially the outputs of promoters.…
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Add summarised by location type tracks. E.g. for additive bigWig data (peaks) we can summarise peaks not by fixed bins, but by CCI, promoters, ChromHMM states. I suggest to implement it like Arithmeti…
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### Description of feature
For each table available via EnsemblDb (e.g. `genes`, `promoters`) we could rename the primary genomic coordinates to the format required by `bioframe` (e.g. `chrom`, `star…
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When I try to click to edit a part, many times it will not let me. Instead, it selects and deselects the part. This happens most consistently with promoters, but happens with others like species as …
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## Summary
#### 1. どんなもの?(Abstract,Conclusion)
#### 2. 先行研究と比べてどこがすごいの?(先行研究,どんな問題を解決した)
#### 3. 技術や手法の"キモ"はどこにある?(新規点,どう解決した)
#### 4. どうやって有効だと検証した?(実験手法)
#### 5. 議論はあるか?(未解決点,応用例)
#### 6. 次に読む…
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This is quite disturbing… Compare the two:
- https://bioconductor.org/packages/3.17/bioc/vignettes/CAGEr/inst/doc/CAGEexp.html#creating-consensus-promoters-across-samples
- https://bioconductor.or…
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```
transcripts.data