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Dear Plinder Authors,
I have a quick question regarding the system files. I was reviewing the system `8q5i__1__1.GA__1.ZB`, but I noticed that the DNA complex seems to be missing from both the `sys…
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Hi,
I have recently installed the get contacts to compute the intermolecular interaction in my system. I have a protein system with 100 chain and I tried to run the get contacts and got the output. …
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Hello,
We have been using Alphafold in order to predict protein:protein interactions using the multimer function. In this case, quite a lot of the processing time is taken up by folding a protein s…
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Just want to express my gratitude! And congrats on winning Nobel Prize in chemistry! Love AlphaFold work! Thank you for everything! Thank you for open-source the codes!
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BioGrid has gene/gene (protein/protein interactions). CTD is exposing these interactions. Given that we have a CTD api, getting these relations from there is probably the way to go in terms of brin…
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Title: A SARS-CoV-2-Human Protein-Protein Interaction Map Reveals Drug Targets and Potential Drug-Repurposing
## Please paste a link to the paper or a citation here:
Link: https://www.biorxi…
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Waterbridges would be an benefitial interaction addition to `ProLIF` :)
From the first glance we could use `class HBAcceptor` as an template for creating the interaction recognition. The idea that …
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The current annotation service only accepts a Gene symbol and annotates with (or searches for) its GO terms, pathways and biogrid interactions. These needs to be expanded to be able to annotate protei…
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Hello,
Thank you for sharing such a good job PeSTo.
I'm doing some work about protein-lipid interactions.
Is it convenient for you to tell me how can I get these protein-lipid data in PeSTo ?…
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Here is the list of the features that require our attention:
* [ ] `pymbe_library.destroy_pmb_object_in_system()`
* [ ] `pymbe_library.parse_sequence_from_file()`
* [ ] `pymbe_library.search_part…