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I did run the rtandem successfully but when I am now running the perseGear I get the following error. What could be the problem?
> parserGear(file = idfile, db = dbfile, decoyPrefix="#REV#",xmx=1,t…
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### Description of the bug
URL of the working file: http://ftp.pride.ebi.ac.uk/pub/databases/pride/resources/proteomes/proteogenomics/benchmakrs/15acadc82868c799e567dd1b219b44/
```
nf-core/qu…
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Hi, I got an error: "FileNotFoundError: [Errno 2] No such file or directory: 'output_cmscan.txt'".
How can I get this problem solved ?
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Filing an overdue issue for this previously discussed enhancement. See early work by @jj-umn as part of Galaxy-P on this branch (checked in by @jmchilton): https://bitbucket.org/galaxyp/galaxyp-toolsh…
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Dear FragPipe-Team,
I'm currently trying to process PASEF-data (converted to mzML with MSconvert with activated "combine ion mobility" option) with OpenSearch parameters (default settings). I'm usi…
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Hi ORFik team,
Thanks for creating and maintaining such a useful package! I've been using it lots. I have a query, not sure if ORFik already does this in some way so perhaps you could help me.
…
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I am trying to use the beta functions
![image](https://github.com/smith-chem-wisc/Spritz/assets/21457/a4c3de3b-a926-4a0d-99c1-083b305ddcab)
but facing this error (log below), any ideas how to pr…
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In some cases like proteogenomics, we may want to search some extracted spectra from mzMLs only to perform the search. It would be possible for SAGE to implement MGF file format as input.?
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For new term requests, please provide the following information:
## Preferred term label
spatial proteomics
## Textual definition
An assay that allows for visualization and quantification …