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Hi,
Could the protein abundance values shown in the ‘Results’ tab for DDA (Data Dependent Analysis) proteomics baseline experiments include **ppb** (parts per billion) as the unit displayed next to…
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Most enrichment analysis tools are designed at the gene level and only support gene IDs.
The first step to performing GO analysis for proteomics data is to convert protein IDs to gene IDs and then…
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@fuerzhou Thanks for putting in so much work on spatial data analysis!
I am trying to process my spatial proteomics dataset, which consists of over 150 processed IMC images. Therefore my anndata ob…
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Hej!
We want to use RolDE on longitudnal proteomics data from Olink assays. The data is confounded by a continuous covariate as well as potential other factors. The instruction manual for RolDE say…
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Dear all
I am seeking your expertise in analyzing my proteomics data. To enhance the coverage of my dataset, I performed Ph fractionation and subsequently injected the fractions separately. As a re…
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I ran an MS-GF+(v2017.01.13) search using SearchGUI, and received the following errors when the output files were being generated:
Writing results...
java.lang.NullPointerException
at edu.ucsd.m…
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There are some overlaps between EDAM and PSI-MS ... some operations I think, and some high-level data concepts in PSI-MS.
Produce a mapping via equivalence axioms.
This came up in context of the…
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PLEASE If there is a way to correlate transcriptomics and proteomics data this would be extremely fascinating! Thank you!
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Your code will not run since `Proteomics_Data.csv` is missing in the GitHub repo. If you cannot add it (either too large or not public) you will have to make a dummy dataset
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is:issue is:open can we use cellphonedb for proteomic data analysis. i have relative abudance of proteins among different samples (cells from different tissues.