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On the newest version of the docker image on Biocontainers (quay.io/biocontainers/searchgui:4.0.33--h779adbc_0 found at https://biocontainers.pro/tools/searchgui), MS Amanda and Myrimatch are not exec…
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Hello
I formatted a Human FASTA file using my own scripts for creating the decoy and Philosopher but I get from FragPipe this error:
`2024-07-16 11:01:27,686 ERROR - No decoys found in the FAST…
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Hello,
Thanks again for all your help with getting Fragpipe set up! We are attempting to do some parameter sweeps with different FDRs for DIA-NN, and are experiencing some crashes. I have attached …
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Informed metabolomics and NOM search space
Due to the metabolome's highly complex and still largely undiscovered molecular composition, de novo
analysis strategies, often used in proteomics and genomi…
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I am trying to process couple of timsTOF-pro raw-files from [MaxQuant analysis](https://fuzzylife.substack.com/p/proteomics-data-processing-with-maxquant) using [timscovert-ed data](https://fuzzylife.…
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Curious to know if/when you might support raw genotypes in RaPID?
Thanks!
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Dear Aurelien Dugourd,
I hope this message finds you well. I am writing to seek your guidance on a few issues I've encountered while attempting to analyze my data using the COSMOS framework. As a fel…
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Hello, I recently used open search to find an unknown modification of 60 AA peptides. The sample was analyzed after processing, but the results showed: Process 'ProteinProphet' finished, exit code: 1
…
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Hi,
We use Fragpipe on Linux in headless mode for metaproteomics. This works very nicely in most cases but when databases grow too big, Fragpipe runs out of memory.
For example: We do metagenomic…
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Hi, I can not reach some of the modules in the "inputs" module. The ones I can use are shown below. Is there another way to use the other ones?
![image](https://user-images.githubusercontent.com/…
ervau updated
2 years ago