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I am getting invalid record error
This is annotsv v3.3.6
```
-- genesAnnotation --
bedtools intersect -sorted -a 20240910001-1.sv.NA.formatted.sorted.bed -b /opt/AnnotSV/share/AnnotSV/Annotat…
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I'd like the description and process of obtaining the background file to be clearer.
The website `genome2d.molgenrug.nl` is mentioned as a possible source, but the website has a lot of functionalit…
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## Describe the issue
A variant (X:15823107C>CAGCCGG) was not annotated using the gnomADe VCF provided (r2.1.1) by VEP b38. The gnomADe VCF has this variant present with AF=0.0147404 and so should ha…
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Hi again!
Just thinking about the RefSeq versus GenBank question for analysis of a metagenome (containment). Aware that Sourmash may struggle with similar genomes (ie strains) due to a smaller numb…
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Dear MicrobeAnnotator team,
I tried to fix the databse with this command:
```
microbeannotator_db_builder --step 9 -t 12 -m diamond --bin_path /net/sgi/metagenomics/thkuo/bin/lib/diamond/ -d /ne…
thkuo updated
4 months ago
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It looks like there might be an issue with the processing of the uniprot-proteome-.nt files for 2.7. I noticed the size of many of the nt files has decreased from the 2.6 release.
According to the …
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Hello Laurence, I am working with Claire Lehenaff on prophages, bacterial diversity and interactions in beverages fermentation context. We would try to investigate social genes in one of our specific …
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I have built Taxonomy from bash taxonomy.sh reference.fa
my reference sequence is around of size 372 GB
when the command is run
cargo run --release -- -s bacterial_alignment.sam -m bowtie2…
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Thanks a ton for writing taxor!
I am currently having problems downloading and using the GTDB hixf-index.
Downloading the GTDB-index file results in a MD5SUM of e24502ab2fe7c1edb415ee1f3141962c …
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The program runs some steps, then an error occurs.
after relabling, there are 140259 eq classes
Building the k-mer equiv. class transcript mappings
0% [> …