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Relative to https://github.com/mc2-center/data-models/issues/49 and https://github.com/mc2-center/data-models/pull/66
Draft of the MC2 data model dictionary, using GitHub pages deployment, is here:…
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Hi,
It is just a naive idea. According to the paper, you describe that scATAC-seq has the issue of "missingness" like the dropout in scRNA-seq data. So what if using a zero-inflated Bernoulli to char…
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Create a new field: multiome_pair
- If multiome == true, then there will be a drop-down list for candidates.
Candidates will be scoped by current experiment scope:
1. If current scope is snRNA-se…
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Hi!
I was following the tutorial for integrating scRNA-seq data and scATAC-seq data using the dataset provided. However, I get the following error when I run the step: atac = tfl.findNeighbors(adat…
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Hello,
I am very interested to use this tool in my work! I wondered if we had four different biological samples for 10X Multiome (which I've integrated using scRNA and Seurat's integration pipeline),…
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Can you tell me How can I download the bam file for scATAC-seq data?
Thanks!
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Hi all,
is anyone thinking of an implementation for scArches of PeakVI? It might be useful for annotating scATAC-seq datasets: given also the rising amount of Multiome datasets around, annotating o…
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I have non-single cell ATAC-seq data, can I use SnapATAC2 to analyse it?
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This is a question about the .table file. I understand that LIGER integrates the scATAC and scRNA-seq. What exactly does this .table contain, and how can I generate it from other pipelines (Seruat, sc…
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Hi,
First of all, thank you for sharing a wonderful dataset and study of scATAC-seq. I took your dataset and analyzed scATAC-seq data according to the method of your manuscript. However, I don't kn…