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Hello,
I am attempting to use the PLIER package for pseudobulk analysis of single-cell RNA sequencing data. I have generated pseudobulk data using the PseudobulkExpression function from Seurat and …
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Dear Authors,
I hope this email finds you well. I would like to express my sincere gratitude to your team for developing the tool that has been of great assistance to me.
Currently, I'm facing an is…
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Hello, thank you for your brilliant work and sorry for a lame question:
Is it expected that the embedding for the same cell is different based on what other cells it is being embedded with? If so, …
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https://data.humancellatlas.org/analyze/portals/single-cell-expression-atlas
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Hi!
Amazing effort to also make a single-cell/spatial variant of Bambu, really excited about this and looking forward to testing it.
I was wondering what the status of this is, is it already mat…
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# What are the steps to reproduce this issue?
Read a dataset which contains an UnstructuredGridRepresentation item with a single value Cell Parent Window attribute.
# What does happen?
The method…
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### Version
0.46
### On which OS did this happen?
Linux
### Reproduction Steps
Read in CVA6 via the [yosys-slang](https://github.com/povik/yosys-slang) plugin and try to write it out again into a…
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Chemistry(darkreaction) determined in oligoR1: darkreaction
Chemistry(darkreaction) determined in oligoR2: darkreaction
Chemistry(darkreaction) determined in cDNAR1 : darkreaction
2024-11-07 00:0…
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Hi,
I just want to ask , can we use CellBender for Single Cell Gene Expression Flex Fixed RNA Profiling (FRP) seq samples to remove backgroud noise / Ambient RNA / empty Droplets because this seq is…
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Hi,
We'd like to request a batch of new terms as part of the CFDE project for SenNet and HubMap DCCs.
Attached is a file of the terms.
There is still work to be done on axiomization and a few o…