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I already mentioned this in the wiki, but I can develop a bit more here. It seems that VCF will be the format of the future for pop gen. Several packages offer support for VCF files but, IMHO, they ar…
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Hi Julian,
I run the software on my own data on linux. The results seems weird. For example, in enhancers' output file, the first 5 lines is:
"
codelen nnei nind nnon npat nsite pCL pFN pCL2 pFN2…
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Currently workflow user is expected to replace this value manually in workflow module file.
Instead, the adaptor should be automatically determine, perhaps from the raw fastQC reports/multiQC and sup…
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Hi,
I got an error while performing the QC. I used the command-
```
metawrap read_qc -1 18097D-01-10_S18_L003_R1_001.fastq.gz -2 18097D-01-10_S18_L003_R2_001.fastq.gz -t 24 -o READ_QC/
Warning:…
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Hi and thanks for the pipeline!
I am trying to run it but I do not manage to change the params through my config file.
Here my command to run the pipeline:
nextflow run goodwright/clipseq -profi…
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Dear COMPSRA team,
I am following your tutorial and the modules Quality Control and Alignment were successful both for an example datafile from yours and for an actual sample.
Now I am having troubl…
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Hi Mike,
I am new to bioinformatics and would like to analyse smallRNA Seq data using ShortStack.
I have downloaded the test data set to get started and would like to analyse it. I am getting …
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### Description of the bug
Running the smRNAseq pipeline does not produce the output listed [here](https://nf-co.re/smrnaseq/2.3.0/docs/output). **MirDeep2 output is missing**. Everything else is the…
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### Description of the bug
I am trying to use 'custom' and let `fastp` to autotect the adapter. According to doc (v2.3.0)
> At least the custom protocol has to be specified, otherwise the pipeline…
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From Azenta:
> Comments: Hi Sam, I hope all is well. Please find attached the RNA QC results for your bulk RNA/small RNA projects with us, with results from Qubit and Tapestation. Please note, many…
kubu4 updated
1 month ago