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Hi!
I am trying to compare mean and noise values between two datasets, one is single cell and one is single nuclei. both runs were performed on the same platform, with identical conditions, and the s…
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Hi,
Thanks for a very useful program.
Unfortunately, I have an issue with incorrect assignments after merging samples:
I'd like to use souporcell to find rare donor cells in tissue from bone …
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## Please use the template below to post a question to https://discourse.scverse.org/c/ecosytem/cell2location/.
### Problem
I would like to estimate the proportion of cell types in each spot.…
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Good day,
I recently noticed when toggling to subset a specific subcluster in the violin plot function on the shiny app that some of the expression values are negative. I'm not sure why this is th…
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Hi team,
Are there any plans to create a mouse benign pancreas or malignant pancreas profile that can be used for any cosmx experiments run on pancreas cancer mouse models?
Best,
Alex
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Hi,
thanks for this very useful tool.
I am trying to run lemur on my dataset (snRNAseq of 10 tumor samples before and after chemotherapy) but when I run the command:
`fit Storing 50% of the data (…
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Hi, I am trying to use my matched snRNAseq and CosMx data to predict cell types for the CosMx data from the snRNAseq. I generally have the code together (See #8660 for a related issue), but I want to …
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**From:** Rebecca Chase
**Email:** chaser@wustl.edu
**Server IP:** 10.142.0.14
**Msg:** Hi. I have uploaded some data to the site but when trying to view I get an error message and it prompts me to…
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Hi Seurat team,
I have some questions about the order of my cluster id's when making a UMAP. I first was renaming the clusters in the below UMAP for a first pass of labeling cell types.
```
Dim…
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**Description of the task:**
For datasets ingested before the ontology labels were updated, we need to update the 10x library preparation method (before: 10x 3' v2 sequencing, now only 10x 3' v2)
Li…