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Dear all,
I would like to know if there is an "official" set of VCF and bed files for _NA24385_ _(HG002)_ structural variants benchmarks, which has hg38 as a reference, similar to those reported in h…
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Hi,
I have recently been working on the identification of structural variants, using four software, Manta,delly,lumpy,gridss, I want to combine the results of these software, using `SURVIVOR 1000 2 1…
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**Is your feature request related to a problem? Please describe.**
The experimental SV filtration is good. But it could be better! Users report that the representation of variants is not intuitiv…
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`chr10 67470511 Minda_11 N N]chr10:68211499] . PASS SVLEN=740988;SVTYPE=BND;SUPP_VEC=ILL_MantaDUP:TANDEM:170154:0:1:0:0:0,ILL_gridss174bf_4460h,PB_severus_BND783_2,ONT_severus_BND834_2,ILL_2795390560:…
jzook updated
3 weeks ago
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* ACE2 binding
* Immune evasion maps
* Incorporate vaccination information? [CDC](https://covid.cdc.gov/covid-data-tracker/#vaccinations) [NYT](https://www.nytimes.com/interactive/2020/us/covid-19-…
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We had an issue where some GATK only structural variants did not obtain a rank score.
Looking closer, we found that we had mistakenly specified "integer" as format on GATKs quality GQC field and sp…
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**[Original report](https://bitbucket.org/simongravel/moments//issues/54) by Aaron Ragsdale (Bitbucket: [aragsdale](https://bitbucket.org/aragsdale), GitHub: [apragsdale](https://github.com/apragsdale…
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Hello,
I would like to use VarSim to generate synthetic reads for structural variants from a given ground truth VCF file. To achieve this, I am using VarSim with the following parameters:
```
var…
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Issue by @MaxUlysse, moved from SciLifeLab#666
- [ ] [ExpansionHunter](https://github.com/Illumina/ExpansionHunter) for estimating repeat sizes
- [ ] [QDNAseq](https://github.com/ccagc/QDNAseq) CN…
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Hi all,
EagleC had offered structural variants with great precision.
We did a high-depth sequencing of several well-known cell lines to test our hi-c experiments modified from classic in-situ …