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Hi Dr.Camargo:
I find this nice project when I read your IMG/VR v4 manuscripts published on Nucleic Acids Research. I have some doubts about this and hope you can help me about them.
1.I tried this…
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Hi, I'm trying the viralFlye pipeline for the first time today, starting with the directory from metaFlye output and the reads. My input command is the following:
~/tools/viralFlye/viralFlye.py --d…
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Thank you very much for your software output, which provides a new workflow for viral group research!
```
Building a new DB, current time: 03/09/2024 10:19:13
New DB name: /home/zhongpei/hard_dis…
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### Description of the bug
I really want to run this pipeline, however, I am facing several issues. First, with spades memory, I ran the assemblies out of the pipeline, and I tried to run the pipelin…
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Hello,
Not sure what is going on with this error, but here is the error:
[2023-05-01 16:03 ERROR] See error details in /home/nolin/SPOTV_quals_subset/13_Viral_Contigs/VirSorter2-nolin/log/iter-0/ste…
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Often, multiple contigs in the reference fasta will belong to the same construct (such as a viral vector or plasmid). It would be nice if there were a way to describe the ordering of the component con…
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List of the **1,000** random SRAs accessions:
`s3://serratus-rayan/1krandom-assembly/1000_random_sra.txt`
(obtained through: `cat novel_id90.fa | grep ">" | cut -c 2- |sort |uniq | shuf -n 1000`)
…
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Hi, and many thanks for the excellent annotation tool. I have a query regarding viral AMG annotation. I have a bunch of viral contigs identified through metagenomics. The contigs were cleaned using C…
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The user should be able to input refseqs from the latest NCBI database v82 (ftp://ftp.ncbi.nlm.nih.gov/refseq/release/) to be able to index, use in alignment, and possibly even derive circular feature…
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Dear, developers! I have the following problem.I used assembled contigs for virMine,command line was
```nohup python2.7 /virMine.py -A /MyData/Megahit_cross_assemble/final.contigs_over10k.fa -t 40 -…