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Hi this might be off topic but have you tried using long read data on AA?
I'm planning to generate HIFI reads for some of my samples and wonder if it's any good with AA?
Probably not as HIFI won't …
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Hi there,
I am using GenomeScope2 to check the heterozygosity rate of a plant genome (2n=28) with HiFi reads.
The initial assembly with Hifiasm was used for running a mummerplot with A. thalian…
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i flashed https://downloads.raspberrypi.com/raspios_lite_arm64/images/raspios_lite_arm64-2023-12-11/2023-12-11-raspios-bookworm-arm64-lite.img.xz to a new SD Card. and started it up on the a PI4.
its…
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Hello: I try to assmebly the hifi reads with the Ul-ont reads( filtered the reads length less than 50kb) 。 The previous steps were run well , but its crashed after the *bin file gnerated. …
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Hi, we have noted that assemblies generated with Flye very frequently introduce variants that are not supported by the reads, particularly at highly repetitive regions (but also in others as well). On…
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Hello, I am doing everything according to the [documentation](https://github.com/vircadia/vircadia-native-core/blob/master/BUILD_WIN.md). At the stage of generating build files I receive the following…
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The link for downloading the models (Emotion Encoder, HIFI-GAN) is not working
hz01 updated
12 months ago
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Hi,
I am trying to run_purge_dups .py but it failed when it tries to run_busco2. I saw inside run_busco2 there are many paths that are specific to your folder. I think I'm supposed to change this to …
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This will help ease the transition when we do deprecate and remove the "HIFI" variables.
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Hi,
There is huge difference with the haplotype 1 and 2 output with version.
Hifiasm version _0.15.4-r347** :
hifiasm -o xx.asm --primary--n-perturb 20000 --f-perturb 0.15 --seed 11 -l3 --n-wei…