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Hi,
I'd like to get you informed that Debian has devloped a [patch](https://salsa.debian.org/med-team/python-biom-format/-/blob/master/debian/patches/python3.10.patch) to support python3.10. There i…
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Hi,
I use PICRUSt2 pipeline this step "place_seqs.py -s ../dna-sequences.fasta -o out.tre -p 1 \
--intermediate intermediate/place_seqs " but it came out this.
usage: place_seqs.py [-…
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Hello,
I did see this issue raised in a closed thread but I wanted to bring it back up because I don't think a solution was ever found. For some reason, a file named "Unnamed: 21_minpath_in.txt" is…
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### Solution to issue cannot be found in the documentation.
- [X] I checked the documentation.
### Issue
Hello, we're running into an issue between bioconda and conda-forge with the latest re…
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Dear All,
Sorry for the simplest question. I am trying to perform PICRUST2 analysis using CAMI dataset. I downloaded fastq files, abundance tables and sequence of genome in fasta file from CAMI websi…
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Process EMP500 data into portal
All data is in EBI (https://www.ebi.ac.uk/ena/browser/view/PRJEB42019?show=reads)
Mark M - pull metadata from EBI -- Need to check to see if GOLD has pulled it i…
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https://github.com/HypothesisWorks/hypothesis/blob/f576f5085f01368c1fe15a7d2b3dc6f1e80849a7/hypothesis-python/src/hypothesis/extra/ghostwriter.py#L222-L240
Well, last weekend I counted all the dist…
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Biom-format is a commonly used file format for microbiome studies.
It boils down to an hdf5 format of scipy.sparse.csr_matrix that also includes sample / gene metadata.
Paper of the file format is…
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Cloned the git as indicated and went on to the installation:
bash ./MTD/Install.sh -t 60 -p ./miniconda
and the install throws error as shown in pictures below.
Note that the clone and the …
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I was starting to explore the ampvis2 package using the test data from this repo (https://github.com/MadsAlbertsen/ampvis2/blob/main/tests/testdata/rich_sparse_otu_table.biom). If I try to load the da…