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I try to annotate using contator:
```
oncotator -v --db-dir /mnt/mpwork/database_exome_prova/oncotator_v1_ds_April052016 --input_format=VCF -o=TCGAMAF /home/maurizio/Desktop/TEST_ONCOT/CALL/100…
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Hello,
I just downloaded and build from git:
``/Kraken/KrakenUniq/krakenuniq-0.7.3/krakenuniq-build --version``
``KrakenUniq version 0.7.3``
``Copyright 2017-2018, Florian Breitwieser (fbreitwie…
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Commas, spaces and some other non-alphanumeric characters are problematic. Please correct the directory and file names. Thank you very much.
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I'm really interested in use DeepTE to classify 26 TE libraries, but I'm really naive with ML algorithms and I don't know how to solve the problem with tensorflow.
I've installed DeepTE from conda r…
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**Snakemake version**
* 5.30.1
**Describe the bug**
Job SUCCESS with slurm but Snakemake waiting for file very long time and fail. Latency-wait option up to 420. We reproduce this bug on 2 differ…
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```
art@aziraphale:~/git/western-bioinfo.github.io$ bundle exec jekyll build
Configuration file: /home/art/git/western-bioinfo.github.io/_config.yml
To use retry middleware with Faraday v2.0+, inst…
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Hi David,
Thanks for the project,
while going through the data set provided to me i found out that there are presence of uppercase letters in line 3 .
Commit hash: https://github.com/davmlaw/2024…
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### Description of the issue:
As we know, SMILES provides a standardized way to encode the 2D structure of chemical compounds like metabolites in a simple text format. This allows for easier storage,…
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Dear Yoshi,
I run into problem during contig quality assesment: BUSCO fails. Below see content of busco.log:
```
Copying Augustus config dir to /flash/BourguignonU/Bucek/Aleos_flash/KT1060-2_UL/10-…
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Pretty sure this is because I did something wrong but I have this:
```
/tmp:$ find . -name gnomadVersion.json
./gnomadVersion.json
./homo_sapiens_grch37/gnomadVersion.json
```
I think there …