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I get the following output when building Jellyfish 2.3.0 tarball on Ubuntu 18.0.2 LTS with python bindings enabled. Configure runs ok but make seems not to find some needed sources. Builds fine if I c…
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## Description
As a bioinformatician, I would like to see what the DNA methylation looks like across all cells in a data set, in a small-ish region, in order to see the data underlying DMRs, enrich…
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Hello,
I am currently doing a basecalling model refinement and am running into some issues in the pre-processing basecalling step surrounding memory management.
Specifically, I have a folder of …
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https://github.com/uclahs-cds/pipeline-align-DNA/blob/76c63a162c81b26bc1aaf714bbd35f03c491579b/main.nf#L71
`Library`, `sample` and `lane` are not sufficient to identify unique read groups. The sa…
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Dear dev team,
I realize the recorded current in the bulk file is immutable during playback when performing adaptive sampling on it with Readfish. Although no actual enrichment can be achieved, I a…
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After running this command:
/nfs/sw/bwameth/bwameth-0.2.0/bin/bwameth.py --reference methylation_cfDNA/resources/bwameth/hg19.fa trunc_test/trunc_test.R1.fastq trunc_test/trunc_test.R2.fastq --threa…
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This is not too urgent but we probably want to implement the following processes
1. Run MarkDuplicatesSpark by library (or SAMtools markdup)
2. Remove intermediate files
3. Merge BAMs with SAMtoo…
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[ErrorDemo.zip](https://github.com/Excel-DNA/ExcelDna/files/2038871/ErrorDemo.zip)
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@JillAshey
Azenta please needs info on how the submitted sample sheet corresponds to the plates submitted for sequencing (i.e. which samples are in which locations in which plate), since that info …
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Repo:
https://github.com/simonelnahas/lfe_test
```
# mix.exs
defmodule LfeTest.MixProject do
use Mix.Project
def project do
[
app: :lfe_test,
version: "0.1.0",
…