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Hi Sam, its me again here.
Tried running the program again with TCGA samples, but unfortunately immediately ran into this new error.
When running the preprocessing, I realise that the tag direc…
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The package seems excellent, pretty work.
When I run the data and code given by the author.
[INFO] Checking the legality of parameters
Warning: Data is of class data.frame. Coercing to dgCMatrix…
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Hello!
We are interested in generating mouse transcriptomics data. I was wondering if there are any recommendations for the minimum number of reads to perform so that the data will be ideal to run t…
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**Describe the bug**
I lifted annotations from a reference genome to another isolate with LiftOff. I wanted to check how the new annotations are. Do they have start and stop codons or in-frame/premat…
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Dear developers,
would you be able to provide an RNA model for bonito somewhere
bonito basecaller **rna**_r9.4.1 /data/reads > basecalls.fasta
Thank you
Christoph
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Hello,
I've got some short read RNA-seq data that I'd like to process against a graph genome.
How do you recommend to proceed? Is there a wiki guide to follow?
Thank you in advance,
Andrea
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Hi,
Thank you for this great tool. My data has high ambient RNA, and I want to get the counts matrix with ambient RNA removed. I wonder if or how souporcell can do this?
Thanks!
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Thank you very much for the data provided on the figshare website, but I found that only the detailed cell annotation was provided in the early_placenta_atac file, and no other RNA or ATAC file was fo…
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```
2 of chains: A
1 of RNA chains: A
wrong atom order in residue of chain A resid 1 P O5'
wrong atom order in residue of chain A resid 1 OP1 C5'
wrong atom order in residue …
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### Description of bug
Hello！
I tried to use Spades to assemble metagenomes on HPC by submitting Slurm scripts. After running the program for a period of time, the log file showed the following erro…